Stem-loop sequence hsa-mir-1238

Accession

MI0006328

Symbol

HGNC:MIR1238

Description

Homo sapiens miR-1238 stem-loop

Gene family

MIPF0000941; mir-1238

Stem-loop

gugag    a  -cc   -  ugu  uug    -  -u   -    g 
     uggg gc   cag ug   gg   gggc ca  ggc gggu g
     |||| ||   ||| ||   ||   |||| ||  ||| |||| g
     accc cg   guc gc   cc   uccg gu  ccg cccg c
----g    -  ucu   u  --u  --u    a  cu   a    a 

Genome context

• Coordinates (GRCh37.p5): chr19: 10662798-10662880 [+]
• Overlapping transcripts:

  sense

  ENST00000540862 ; ATG4D-202; intron 3

  ENST00000540862 ; ATG4D-202; intron 3

  ENST00000540862 ; ATG4D-202; intron 3

  ENST00000309469 ; ATG4D-201; intron 8

  ENST00000309469 ; ATG4D-201; intron 8

  ENST00000309469 ; ATG4D-201; intron 8

Database links

• ENTREZGENE: 100302226;MIR1238
• HGNC: 33933;MIR1238

Mature sequence hsa-miR-1238-5p

• Accession: MIMAT0022947
• Sequence: 1 - gugagugggagccccagugugug - 23
• Deep sequencing: 2 reads, 2 experiments
• Evidence: not experimental

Mature sequence hsa-miR-1238-3p

• Accession: MIMAT0005593
• Previous IDs: hsa-miR-1238
• Sequence: 62 - cuuccucgucugucugcccc - 81
• Evidence: experimental; cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1238-3p
  • MICRORNA.ORG:hsa-miR-1238-3p
  • MIRDB:hsa-miR-1238-3p
  • RNA22-HSA:hsa-miR-1238-3p
  • TARGETSCAN-VERT:hsa-miR-1238

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).