Stem-loop sequence hsa-mir-1233-1

Accession

MI0006323 (change log)

Previous IDs

hsa-mir-1233

Symbol

HGNC:MIR1233-1

Description

Homo sapiens miR-1233-1 stem-loop

Gene family

MIPF0000578; mir-1233

Literature search

15 open access papers mention hsa-mir-1233-1
(59 sentences)

Stem-loop

   guga        c      acgg    ggga    ca     aug 
5'     gugggagg cagggc    cagg    gcug  gggcu   g
       |||||||| ||||||    ||||    ||||  |||||    
3'     cgcccucc gucccg    gucu    cgac  cccgg   g
   --ga        u      ---a    ---g    --     gga 

Deep sequencing

88 reads, 2.13 reads per million, 47 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr15: 34382069-34382150 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000387961 ; EMC7-003; intron 2

  OTTHUMT00000251519 ; EMC7-001; intron 3

  OTTHUMT00000387962 ; EMC7-004; intron 3

  ENST00000527822 ; EMC7-003; intron 2

  ENST00000256545 ; EMC7-001; intron 3

  ENST00000528949 ; EMC7-004; intron 3

Database links

• EntrezGene:MIR1233
• HGNC:MIR1233-1
• miRBase Tracker:MI0006323

Mature sequence hsa-miR-1233-5p

• Accession: MIMAT0022943
• Sequence: 4 - agugggaggccagggcacggca - 25
• Deep sequencing: 48 reads, 19 experiments
• Evidence: experimental; meta-analysis [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-1233-5p
  • miRDB:hsa-miR-1233-5p

Mature sequence hsa-miR-1233-3p

• Accession: MIMAT0005588
• Previous IDs: hsa-miR-1233
• Sequence: 63 - ugagcccuguccucccgcag - 82
• Deep sequencing: 80 reads, 26 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-1233-3p
  • miRDB:hsa-miR-1233-3p
  • microrna.org:hsa-miR-1233-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).