Stem-loop sequence hsa-mir-1229

Accession

MI0006319

Symbol

HGNC:MIR1229

Description

Homo sapiens miR-1229 stem-loop

Stem-loop

--     u     -u   gg     c   -gg   g 
  guggg agggu  ugg  gagag gug   cug g
  ||||| |||||  |||  ||||| |||   ||| g
  caccc ucccg  acc  cucuc cac   gac u
ga     -     uc   -a     c   agg   u 

Deep sequencing

7 reads, 5 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 179225278-179225346 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000375227 ; MGAT4B-022; intron 2

  OTTHUMT00000375227 ; MGAT4B-022; intron 2

  OTTHUMT00000375227 ; MGAT4B-022; intron 2

  OTTHUMT00000375225 ; MGAT4B-023; intron 4

  OTTHUMT00000375225 ; MGAT4B-023; intron 4

  OTTHUMT00000375225 ; MGAT4B-023; intron 4

  OTTHUMT00000374477 ; MGAT4B-014; intron 5

  OTTHUMT00000374477 ; MGAT4B-014; intron 5

  OTTHUMT00000374477 ; MGAT4B-014; intron 5

  OTTHUMT00000375228 ; MGAT4B-021; intron 7

  OTTHUMT00000375228 ; MGAT4B-021; intron 7

  OTTHUMT00000375228 ; MGAT4B-021; intron 7

  OTTHUMT00000375226 ; MGAT4B-020; intron 8

  OTTHUMT00000375226 ; MGAT4B-020; intron 8

  OTTHUMT00000375226 ; MGAT4B-020; intron 8

  OTTHUMT00000375229 ; MGAT4B-018; intron 9

  OTTHUMT00000375229 ; MGAT4B-018; intron 9

  OTTHUMT00000375229 ; MGAT4B-018; intron 9

  OTTHUMT00000374440 ; MGAT4B-004; intron 10

  OTTHUMT00000374439 ; MGAT4B-003; intron 10

  OTTHUMT00000374440 ; MGAT4B-004; intron 10

  OTTHUMT00000374439 ; MGAT4B-003; intron 10

  OTTHUMT00000374440 ; MGAT4B-004; intron 10

  OTTHUMT00000374439 ; MGAT4B-003; intron 10

  OTTHUMT00000253504 ; MGAT4B-002; intron 12

  OTTHUMT00000253504 ; MGAT4B-002; intron 12

  OTTHUMT00000253504 ; MGAT4B-002; intron 12

  OTTHUMT00000253503 ; MGAT4B-001; intron 13

  OTTHUMT00000253503 ; MGAT4B-001; intron 13

  OTTHUMT00000253503 ; MGAT4B-001; intron 13

  ENST00000522451 ; MGAT4B-022; intron 2

  ENST00000522451 ; MGAT4B-022; intron 2

  ENST00000522451 ; MGAT4B-022; intron 2

  ENST00000522293 ; MGAT4B-023; intron 4

  ENST00000522293 ; MGAT4B-023; intron 4

  ENST00000522293 ; MGAT4B-023; intron 4

  ENST00000520969 ; MGAT4B-014; intron 5

  ENST00000520969 ; MGAT4B-014; intron 5

  ENST00000520969 ; MGAT4B-014; intron 5

  ENST00000520875 ; MGAT4B-021; intron 7

  ENST00000520875 ; MGAT4B-021; intron 7

  ENST00000520875 ; MGAT4B-021; intron 7

  ENST00000518980 ; MGAT4B-020; intron 8

  ENST00000518980 ; MGAT4B-020; intron 8

  ENST00000518980 ; MGAT4B-020; intron 8

  ENST00000523382 ; MGAT4B-018; intron 9

  ENST00000523382 ; MGAT4B-018; intron 9

  ENST00000523382 ; MGAT4B-018; intron 9

  ENST00000518778 ; MGAT4B-004; intron 10

  ENST00000519836 ; MGAT4B-003; intron 10

  ENST00000518778 ; MGAT4B-004; intron 10

  ENST00000519836 ; MGAT4B-003; intron 10

  ENST00000518778 ; MGAT4B-004; intron 10

  ENST00000519836 ; MGAT4B-003; intron 10

  ENST00000337755 ; MGAT4B-002; intron 12

  ENST00000337755 ; MGAT4B-002; intron 12

  ENST00000337755 ; MGAT4B-002; intron 12

  ENST00000292591 ; MGAT4B-001; intron 13

  ENST00000292591 ; MGAT4B-001; intron 13

  ENST00000292591 ; MGAT4B-001; intron 13

Database links

• ENTREZGENE: 100302156;MIR1229
• HGNC: 33924;MIR1229

Mature sequence hsa-miR-1229-5p

• Accession: MIMAT0022942
• Sequence: 1 - guggguaggguuugggggagagcg - 24
• Deep sequencing: 2 reads, 2 experiments
• Evidence: not experimental

Mature sequence hsa-miR-1229-3p

• Accession: MIMAT0005584
• Previous IDs: hsa-miR-1229
• Sequence: 47 - cucucaccacugcccucccacag - 69
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1229-3p
  • MICRORNA.ORG:hsa-miR-1229-3p
  • MIRDB:hsa-miR-1229-3p
  • RNA22-HSA:hsa-miR-1229-3p
  • TARGETSCAN-VERT:hsa-miR-1229

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).