Stem-loop sequence hsa-mir-1228

Accession

MI0006318

Symbol

HGNC:MIR1228

Description

Homo sapiens miR-1228 stem-loop

Gene family

MIPF0000924; mir-1228

Stem-loop

---gu        g        uggu    ggugg     g 
     gggcgggg caggugug    gggu     ccugc g
     |||||||| ||||||||    ||||     ||||| u
     cccgcucc guccacac    cccg     ggacg g
gaccc        -        ---u    -----     a 

Deep sequencing

42 reads, 12 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 57588287-57588359 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000412772 ; LRP1-001; intron 49

  OTTHUMT00000412772 ; LRP1-001; intron 49

  OTTHUMT00000412772 ; LRP1-001; intron 49

  ENST00000243077 ; LRP1-001; intron 49

  ENST00000243077 ; LRP1-001; intron 49

  ENST00000243077 ; LRP1-001; intron 49

Database links

• ENTREZGENE: 100302201;MIR1228
• HGNC: 33928;MIR1228

Mature sequence hsa-miR-1228-5p

• Accession: MIMAT0005582
• Previous IDs: hsa-miR-1228*
• Sequence: 1 - gugggcgggggcaggugugug - 21
• Deep sequencing: 19 reads, 4 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1228-5p
  • MICRORNA.ORG:hsa-miR-1228-5p
  • MIRDB:hsa-miR-1228-5p
  • RNA22-HSA:hsa-miR-1228-5p
  • TARGETMINER:hsa-miR-1228-5p

Mature sequence hsa-miR-1228-3p

• Accession: MIMAT0005583
• Previous IDs: hsa-miR-1228
• Sequence: 52 - ucacaccugccucgcccccc - 71
• Deep sequencing: 22 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1228-3p
  • MICRORNA.ORG:hsa-miR-1228-3p
  • MIRDB:hsa-miR-1228-3p
  • RNA22-HSA:hsa-miR-1228-3p
  • TARGETMINER:hsa-miR-1228-3p
  • TARGETSCAN-VERT:hsa-miR-1228

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).