Stem-loop sequence ptr-mir-1224

Accession

MI0006309 (change log)

Description

Pan troglodytes miR-1224 stem-loop

Gene family

MIPF0000440; mir-1224

Stem-loop

   g      cuc         a   u  u  cgccggggccgg 
5'  ugagga   gggaggugg ggg gg gc            g
    ||||||   ||||||||| ||| || ||            c
3'  acuccu   uccuccacc ccc cu cg            g
   g      cuc         c   u  u  cucgacuuuguc 

Confidence

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Genome context

• Coordinates (Pan_tro3.0; GCA_000001515.5): chr3: 188230294-188230378 [+]
• Overlapping transcripts:

  sense

  ENSPTRT00000029239 ; VWA5B2-201; intron 19

Database links

• EntrezGene:MIR1224
• miRBase Tracker:MI0006309

Mature sequence ptr-miR-1224-5p

• Accession: MIMAT0005568
• Sequence: 1 - gugaggacucgggagguggagggu - 24
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:ptr-miR-1224-5p

Mature sequence ptr-miR-1224-3p

• Accession: MIMAT0005569
• Sequence: 65 - ccccaccuccucucuccucag - 85
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:ptr-miR-1224-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).