Stem-loop sequence cpa-MIR162a

Accession MI0006308
Description Carica papaya miR162a stem-loop
Gene family MIPF0000127; MIR162_1
Stem-loop 
a      agu a     g    c    c       ucuuccugggaauuuggugu 
 ggguaa   c cugga gcag gguu aucgauc                    g
 ||||||   | ||||| |||| |||| |||||||                     
 cccauu   g gaccu cguc ccaa uagcuag                    a
c      --- c     a    u    a       cuaaguacaagacacuaaaa
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Comments

cpa-MIR162a was identified within a 2699 bp putative pri-miRNA isolated from a Carica papaya root cDNA library (accession EF512306).

Mature sequence cpa-miR162a

Accession MIMAT0005567
Sequence

80 -  

ucgauaaaccucugcauccag

 - 100

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Evidence experimental; cloned [1]

References

1
"Differentially expressed and new non-protein-coding genes from a Carica papaya root transcriptome survey" Porter BW, Aizawa KS, Zhu YJ, Christopher DA Plant Sci. 174(1):38-50(2008)