Stem-loop sequence mmu-mir-669f

Accession MI0006287
Symbol MGI:Mir669f
Description Mus musculus miR-669f stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
-------------------------   a     c     g    gu        c     c        au 
                         ugu ugugc ugugu uaua  ugugugug augug augugugu  a
                         ||| ||||| ||||| ||||  |||||||| ||||| ||||||||   
                         aca acacg acgca auau  acacacac uacau uacauaua  u
aguugcucacgguaaggagacacac   a     a     a    gc        a     a        ag
Get sequence
Deep sequencing
reads, experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10467229-10467349 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-669f
mmu-mir-466m chr2: 10466663-10466746 [+]
mmu-mir-466f-1 chr2: 10466944-10467037 [+]
mmu-mir-669f chr2: 10467229-10467349 [+]
mmu-mir-669e chr2: 10467495-10467613 [+]
mmu-mir-669b chr2: 10467790-10467886 [+]
mmu-mir-669d chr2: 10468343-10468463 [+]
mmu-mir-466f-2 chr2: 10468675-10468768 [+]
mmu-mir-669l chr2: 10468971-10469068 [+]
mmu-mir-669d-2 chr2: 10471644-10471729 [+]
mmu-mir-466f-3 chr2: 10471953-10472046 [+]
mmu-mir-297a-2 chr2: 10472254-10472343 [+]
mmu-mir-466o chr2: 10472540-10472623 [+]
mmu-mir-467c chr2: 10473931-10474027 [+]
mmu-mir-466b-1 chr2: 10474219-10474300 [+]
mmu-mir-669a-3 chr2: 10474433-10474541 [+]
mmu-mir-669k chr2: 10475300-10475426 [+]
mmu-mir-467a-1 chr2: 10476346-10476418 [+]
mmu-mir-466b-8 chr2: 10476628-10476713 [+]
mmu-mir-669a-1 chr2: 10476853-10476949 [+]
mmu-mir-669g chr2: 10477150-10477272 [+]
Database links

Mature sequence mmu-miR-669f-5p

Accession MIMAT0017327
Sequence

20 -  

aguugugugugcaugugcaugugu

 - 43

Get sequence
Evidence experimental; 454 [2], Solexa [3]
Predicted targets

Mature sequence mmu-miR-669f-3p

Accession MIMAT0005839
Previous IDs mmu-miR-669f
Sequence

57 -  

cauauacauacacacacacguau

 - 79

Get sequence
Evidence experimental; 454 [1], Solexa [3]
Predicted targets

References

1
PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2
PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).