Stem-loop sequence hsa-mir-1178

Accession

MI0006271

Symbol

HGNC:MIR1178

Description

Homo sapiens miR-1178 stem-loop

Gene family

MIPF0000601; mir-1178

Stem-loop

      g      gagga       gg cca    c g     ca 
gcguug cuggca     agggaag  u   gggu a cugag  u
|||||| ||||||     |||||||  |   |||| | |||||   
uguagu gacugu     ucccuuc  g   cucg u gacuc  g
      g      -aaga       uu uca    u g     cc 

Deep sequencing

5 reads, 3 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 120151439-120151529 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000401865 ; CIT-013; exon 1

  OTTHUMT00000401866 ; CIT-014; exon 1

  OTTHUMT00000401865 ; CIT-013; exon 1

  OTTHUMT00000401866 ; CIT-014; exon 1

  OTTHUMT00000401865 ; CIT-013; exon 1

  OTTHUMT00000401866 ; CIT-014; exon 1

  OTTHUMT00000401848 ; CIT-006; exon 24

  OTTHUMT00000401849 ; CIT-007; exon 24

  OTTHUMT00000401848 ; CIT-006; exon 24

  OTTHUMT00000401849 ; CIT-007; exon 24

  OTTHUMT00000259412 ; CIT-003; exon 25

  OTTHUMT00000259412 ; CIT-003; exon 25

  OTTHUMT00000259410 ; CIT-001; exon 33

  OTTHUMT00000259410 ; CIT-001; exon 33

  OTTHUMT00000401847 ; CIT-005; exon 34

  OTTHUMT00000401847 ; CIT-005; exon 34

  ENST00000543239 ; CIT-013; exon 1

  ENST00000536008 ; CIT-014; exon 1

  ENST00000543239 ; CIT-013; exon 1

  ENST00000536008 ; CIT-014; exon 1

  ENST00000543239 ; CIT-013; exon 1

  ENST00000536008 ; CIT-014; exon 1

  ENST00000392520 ; CIT-006; exon 24

  ENST00000537607 ; CIT-007; exon 24

  ENST00000392520 ; CIT-006; exon 24

  ENST00000537607 ; CIT-007; exon 24

  ENST00000545913 ; CIT-003; exon 25

  ENST00000545913 ; CIT-003; exon 25

  ENST00000261833 ; CIT-001; exon 33

  ENST00000261833 ; CIT-001; exon 33

  ENST00000392521 ; CIT-005; exon 34

  ENST00000392521 ; CIT-005; exon 34

Database links

• ENTREZGENE: 100302274;MIR1178
• HGNC: 35259;MIR1178

Mature sequence hsa-miR-1178-5p

• Accession: MIMAT0022940
• Sequence: 30 - cagggucagcugagcaug - 47
• Evidence: not experimental

Mature sequence hsa-miR-1178-3p

• Accession: MIMAT0005823
• Previous IDs: hsa-miR-1178
• Sequence: 56 - uugcucacuguucuucccuag - 76
• Evidence: experimental; cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-1178-3p
  • MICRORNA.ORG:hsa-miR-1178-3p
  • MIRDB:hsa-miR-1178-3p
  • RNA22-HSA:hsa-miR-1178-3p
  • TARGETSCAN-VERT:hsa-miR-1178

References

1. PMID:17922033 "MicroRNA expression signature of human sarcomas" Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, van de Rijn M Oncogene. 27:2015-2026(2008).