Stem-loop sequence cre-MIR1153

Accession

MI0006215

Description

Chlamydomonas reinhardtii miR1153 stem-loop

Stem-loop

                    u           ua    c          g              ug 
caaaugggccaucguauuac aucagugcugc  gcaa uacaaggcgg caugaaggucgauu  a
|||||||||||||||||||| |||||||||||  |||| |||||||||| ||||||||||||||   
guuuacucgguagcguaaug uagucacgaug  cguu auguuccgcc guacuuccagcuag  u
                    u           gc    a          a              cc 

Deep sequencing

16 reads, 1 experiments

Comments

Molner et al. identify two miR/miR* pairs from the same hairpin precursor [1].

Genome context

• Coordinates (CHLRE3.1): scaffold_15: 1291877-1292010 [+]
• Overlapping transcripts:

  intergenic

Mature sequence cre-miR1153-5p.1

• Accession: MIMAT0005398
• Previous IDs: cre-miR1153.1
• Sequence: 5 - ugggccaucguauuacuaucag - 26
• Evidence: experimental; cloned [1]

Mature sequence cre-miR1153-5p.2

• Accession: MIMAT0005399
• Previous IDs: cre-miR1153.2*
• Sequence: 25 - agugcugcuagcaacuacaag - 45
• Evidence: experimental; cloned [1]

Mature sequence cre-miR1153-3p.2

• Accession: MIMAT0005400
• Previous IDs: cre-miR1153.2
• Sequence: 91 - uuguaauugccgguagcacuga - 112
• Deep sequencing: 11 reads, 1 experiments
• Evidence: experimental; cloned [1]

Mature sequence cre-miR1153-3p.1

• Accession: MIMAT0005401
• Previous IDs: cre-miR1153.1*
• Sequence: 111 - gauuguaaugcgauggcuc - 129
• Deep sequencing: 5 reads, 1 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17538623 "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii" Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC Nature. 447:1126-1129(2007).