Stem-loop sequence rno-mir-466b-1

Accession MI0006112
Description Rattus norvegicus miR-466b-1 stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
--ca     a a             a   cca          u 
    ugugu u uaugugugugugu ugu   uguguguaua g
    ||||| | ||||||||||||| |||   ||||||||||  
    acacg a gugcacacacaua aca   acauacauau a
acac     a c             c   cac          a
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
17: 79291564-79291649 [-]
sense
ENSRNOT00000067145 ; D3ZX07_RAT; intron 9
ENSRNOT00000020353 ; D3ZUE0_RAT; intron 9
ENSRNOT00000042430 ; D4A7T0_RAT; intron 9
ENSRNOT00000065942 ; Sfmbt2; intron 9
ENSRNOT00000067145 ; D3ZX07_RAT; intron 9
ENSRNOT00000020353 ; D3ZUE0_RAT; intron 9
ENSRNOT00000042430 ; D4A7T0_RAT; intron 9
ENSRNOT00000065942 ; Sfmbt2; intron 9
ENSRNOT00000067145 ; D3ZX07_RAT; intron 9
ENSRNOT00000020353 ; D3ZUE0_RAT; intron 9
ENSRNOT00000042430 ; D4A7T0_RAT; intron 9
ENSRNOT00000065942 ; Sfmbt2; intron 9
Clustered miRNAs
< 10kb from rno-mir-466b-1
rno-mir-466b-1 17: 79291564-79291649 [-]
rno-mir-466b-2 17: 79288534-79288615 [-]
Database links

Mature sequence rno-miR-466b-5p

Accession MIMAT0005278
Previous IDs rno-miR-466b
Sequence

11 -  

uauguguguguguauguccaug

 - 32

Get sequence
Evidence experimental; cloned [1], SOLiD [2]

Mature sequence rno-miR-466b-1-3p

Accession MIMAT0017285
Previous IDs rno-miR-466b-1*
Sequence

46 -  

auacauacacacacacauacac

 - 67

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).