Stem-loop sequence ppt-MIR1054

Accession MI0006013
Description Physcomitrella patens miR1054 stem-loop
Stem-loop 
gcgacauggauuccaauuuugga        g         a       c   acuc     cu  -aa  a     u   ugcu   u    ca  c   --  -    u           -  -  c 
                       ggcaaagg aggaguaga gggaggg uua    gacau  ga   gc uuggu gca    gug ucuu  ac uga  cg gugu cugcagcaaug ca ca c
                       |||||||| ||||||||| ||||||| |||    |||||  ||   || ||||| |||    ||| ||||  || |||  || |||| ||||||||||| || || u
                       ccguuucu uccuuaucu cucuccc aau    cugug  cu   cg aacca ugu    cac agga  ug acu  gc caca ggcgucguugc gu gu u
-gcaggguccauguacaaacauu        g         -       a   gaca     -u  ggc  c     u   ----   u    --  a   ug  u    -           a  a  c
Get sequence
Deep sequencing
270 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_112: 1004878-1005122 [-]
intergenic

Mature sequence ppt-miR1054

Accession MIMAT0005172
Sequence

195 -  

uaaacccucucucuauuccug

 - 215

Get sequence
Deep sequencing 257 reads, 3 experiments
Evidence experimental; 454 [1]

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).