Stem-loop sequence ppt-MIR1051

Accession MI0006010
Description Physcomitrella patens miR1051 stem-loop
Stem-loop 
uuggcgucucgucuugcgccgauaccuuaac      -      a               cg      u          gaauuaa     acaga  a   c 
                               gugguu caagug acaggaagagguuug  agaaug uguucugaaa       ccugg     gu gcg a
                               |||||| |||||| |||||||||||||||  |||||| ||||||||||       |||||     || ||| g
                               caccga guucau uguccuucucuaaac  ucuuac augaggcuuu       ggauc     ca cgu a
-gaauggaguaucguccgugguucggaauaa      a      c               aa      u          ------g     ----a  a   a
Get sequence
Deep sequencing
46 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_56: 1824620-1824816 [+]
intergenic
Clustered miRNAs
< 10kb from ppt-MIR1051
ppt-MIR536f scaffold_56: 1822559-1822734 [+]
ppt-MIR1051 scaffold_56: 1824620-1824816 [+]
ppt-MIR536a scaffold_56: 1827125-1827323 [-]

Mature sequence ppt-miR1051-5p

Accession MIMAT0005167
Sequence

34 -  

gguucaagugaacaggaaga

 - 53

Get sequence
Deep sequencing 16 reads, 2 experiments
Evidence experimental; 454 [1]

Mature sequence ppt-miR1051-3p

Accession MIMAT0005168
Sequence

147 -  

uuccugucuacuugaagccac

 - 167

Get sequence
Deep sequencing 25 reads, 3 experiments
Evidence experimental; 454 [1]

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).