Stem-loop sequence ppt-MIR1030a

Accession MI0005975
Description Physcomitrella patens miR1030a stem-loop
Gene family MIPF0000380; MIR1030
Stem-loop 
aagguacg     -----aa       c   c            cu    c       aa    gacuuu   g      -  g     ugca      -c     c  uu   a ag 
        caauu       agcugca cgu acauuucugcau  gcac ugcacca  acgc      gag uuguga ug aauuc    gucaca  ccagc au  gca g  u
        |||||       ||||||| ||| ||||||||||||  |||| |||||||  ||||      ||| |||||| || |||||    ||||||  ||||| ||  ||| |   
        guuag       ucgaugu gcg uguaaagacgua  cgug acguggu  ugug      uuc gacacu ac uuagg    cggugu  gguug ug  cgu c  g
------ga     gucaaac       u   u            uu    -       ca    ------   g      u  g     -uaa      ua     -  gc   - uu
Get sequence
Deep sequencing
400 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_110: 19833-20047 [+]
intergenic

Mature sequence ppt-miR1030a

Accession MIMAT0005123
Sequence

33 -  

ucugcaucugcaccugcacca

 - 53

Get sequence
Deep sequencing 125 reads, 3 experiments
Evidence experimental; 454 [1]

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).