Stem-loop sequence ppt-MIR1029

Accession MI0005974
Description Physcomitrella patens miR1029 stem-loop
Stem-loop 
--     c   gug ac      caucac         uu      u      a     ----ga      ---gc      a 
  gcaca aau   c  acguua      uaucaguau  uugguu gagaga aggag      caggag     uacgag u
  ||||| |||   |  ||||||      |||||||||  |||||| |||||| |||||      ||||||     |||||| u
  cgugu uug   g  ugcagu      auagucaua  aaccaa cucucu uccuc      guucuu     guguuu u
uu     -   -aa cu      -uaauc         cc      -      c     aagcgg      aguuu      g
Get sequence
Deep sequencing
249 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_381: 111310-111465 [+]
intergenic

Mature sequence ppt-miR1029

Accession MIMAT0005122
Sequence

106 -  

ucucucucaaccaaccauac

 - 125

Get sequence
Deep sequencing 234 reads, 3 experiments
Evidence experimental; 454 [1]
Validated targets

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).