Stem-loop sequence ppt-MIR1023b

Accession MI0005961
Description Physcomitrella patens miR1023b stem-loop
Gene family MIPF0000396; MIR1023
Stem-loop 
---    cgc  c   cc           u  ug ca        c  u      g    ucauga       ga     -  a      g 
   gaag   gg ggg  agcuugcaauu ca  a  cacucucu ca uucucu ccug      cuugguu  ucgau gg gcggug u
   ||||   || |||  ||||||||||| ||  |  |||||||| || |||||| ||||      |||||||  ||||| || |||||| u
   uuuc   cc ucc  ucgaacguuaa gu  u  gugagaga gu aagaga gggu      ggacuag  aguua cc cguuac u
gcu    uuu  -   --           -  gu ac        a  u      g    ---uga       -g     g  -      u
Get sequence
Deep sequencing
7071 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_257: 30575-30746 [-]
intergenic

Mature sequence ppt-miR1023b-5p

Accession MIMAT0005104
Sequence

34 -  

acacucucuccauuucucugc

 - 54

Get sequence
Deep sequencing 2649 reads, 3 experiments
Evidence experimental; 454 [1]
Validated targets

Mature sequence ppt-miR1023b-3p

Accession MIMAT0005105
Sequence

122 -  

agagaauugaagagagugcau

 - 142

Get sequence
Deep sequencing 4422 reads, 3 experiments
Evidence experimental; 454 [1]

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).