Stem-loop sequence ppt-MIR536f
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| Accession |
MI0005934 |
| Description |
Physcomitrella patens miR536f stem-loop |
| Stem-loop |
uucgacg g --- u - ca - ucucucugaacaucagauaucggucgguagaguug
uc uguu aagug gauucc uuag gc cauaguuugguaugaagc a
|| |||| ||||| |||||| |||| || ||||||||||||||||||
ag acaa uucac cuaagg aauc cg gugucgaaccgugcuucg g
----gaa - guc u g ua u cgagccuuuugucucgauuccaguacacuuguuug
Get sequence
|
| Deep sequencing |
| 9236 reads, 3 experiments |
 |
|
| Genome context |
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Coordinates (JGI1.1)
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Overlapping transcripts
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|
scaffold_56:
1822559-1822734 [+] |
-
intergenic
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| Clustered miRNAs |
| < 10kb from ppt-MIR536f |
| ppt-MIR536f |
scaffold_56: 1822559-1822734 [+] |
| ppt-MIR1051 |
scaffold_56: 1824620-1824816 [+] |
| ppt-MIR536a |
scaffold_56: 1827125-1827323 [-] |
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