Stem-loop sequence ppt-MIR536e

Accession MI0005933
Description Physcomitrella patens miR536e stem-loop
Gene family MIPF0000398; MIR536
Stem-loop 
-------------------------------------------------------------------------------------------------uguguggauccuaagugucuccccuuggaagccgcaguuuggcaugaagcacuuauuccuuugcgcauccauuuugugacugcuuguauugagucgaauccaauuccuugccuucuacuucc   c  uc    ucac   ---u -        c    -----    -  u uu      c    u 
                                                                                                                                                                                                                           uuc aa  uaga    ucc    g guuuuuca auug     uuug gu g  gggggu auau g
                                                                                                                                                                                                                           ||| ||  ||||    |||    | |||||||| ||||     |||| || |  |||||| |||| u
                                                                                                                                                                                                                           aag uu  aucu    agg    c cagaaagu uaac     aagc cg u  uuucca uaug u
gaaccaacgugugucgaaccgugcuuugagacuauaggggaguuauuaaaaucccucuuuagcacguaccuguugacuucuaacugcucauaucacucuaauugucacgaucauacaagcaggggccaucacugacgucacugaaagacgucagugacuucauccgcgcguuuccuucuauggcuguucuggaguuugauaacccacaccgacgucuuu   c  ua    -caa   uugu g        u    uucua    a  c uu      -    u
Get sequence
Deep sequencing
13463 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_82: 417955-418418 [+]
intergenic

Mature sequence ppt-miR536e

Accession MIMAT0005065
Sequence

439 -  

uucgugccaagcugugugcaac

 - 460

Get sequence
Deep sequencing 9476 reads, 3 experiments
Evidence experimental; 454 [1]

References

1
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).