Stem-loop sequence cel-mir-1020

Accession

MI0005881 (change log)

Description

Caenorhabditis elegans miR-1020 stem-loop

Stem-loop

   -- u                 cuuagacaaaacaa 
5'   g aaguguuacagaauaau              c
     | |||||||||||||||||               
3'   c uucacagugucuuauua              u
   ga u                 aaaaguaauuaaaa 

Deep sequencing

1757 reads, 0 reads per million, 13 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIII: 10047746-10047815 [-]
• Overlapping transcripts:

  sense

  T16G12.1 ; T16G12.1; intron 6

Database links

• RNAcentral:URS000034DFE4_6239
• miRBase Tracker:MI0005881

Mature sequence cel-miR-1020-5p

• Accession: MIMAT0020356
• Previous IDs: cel-miR-1020*
• Sequence: 1 - guaaguguuacagaauaaucuu - 22
• Deep sequencing: 122 reads, 11 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000774FE6_6239

Mature sequence cel-miR-1020-3p

• Accession: MIMAT0005033
• Previous IDs: cel-miR-1020
• Sequence: 50 - auuauucugugacacuuucag - 70
• Deep sequencing: 1633 reads, 13 experiments
• Evidence: experimental; 454 [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00002BED23_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-1020
  • microrna.org:cel-miR-1020-3p

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).