Stem-loop sequence cel-mir-1018

Accession

MI0005879

Description

Caenorhabditis elegans miR-1018 stem-loop

Stem-loop

--         -         c   aua 
  guaaguuca ugauuucuc cau   u
  ||||||||| ||||||||| |||   u
  cauucaggu acuagagag gua   u
ga         u         a   cuu 

Deep sequencing

2 reads, 1 experiments

Genome context

• Coordinates (WBcel215): X: 1879452-1879507 [+]
• Overlapping transcripts:

  sense

  Y59E1B.1 ; Y59E1B.1; intron 1

  Y59E1B.1 ; Y59E1B.1; intron 1

  Y59E1B.1 ; Y59E1B.1; intron 1

Clustered miRNAs

< 10kb from cel-mir-1018

• cel-mir-4807: X: 1872460-1872520 [+]
• cel-mir-4808: X: 1872946-1873002 [+]
• cel-mir-4809: X: 1873640-1873698 [+]
• cel-mir-2220: X: 1873821-1873878 [+]
• cel-mir-4810: X: 1875732-1875788 [+]
• cel-mir-1018: X: 1879452-1879507 [+]
• cel-mir-4925: X: 1879556-1879614 [+]
• cel-mir-4923b: X: 1879634-1879692 [+]
• cel-mir-4923a: X: 1879870-1879930 [+]
• cel-mir-4921: X: 1879973-1880032 [+]

Mature sequence cel-miR-1018

• Accession: MIMAT0005031
• Sequence: 35 - agagagaucauuggacuuacag - 56
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; 454 [1], Solexa [2]
• Validated targets:
  • TARBASE:cel-miR-1018
• Predicted targets:
  • MICRORNA.ORG:cel-miR-1018
  • RNA22-CEL:cel-miR-1018
  • TARGETSCAN-WORM:cel-miR-1018

References

1. PMID:17589500 "Intronic microRNA precursors that bypass Drosha processing" Ruby JG, Jan CH, Bartel DP Nature. 448:83-86(2007).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).