Stem-loop sequence dme-mir-252

Accession MI0005858
Description Drosophila melanogaster miR-252 stem-loop
Gene family MIPF0000285; mir-252
Stem-loop 
accaa  u      cc        a u  c       uuag   -  u 
     gu cgcuuu  uaaguacu g gc gcaggag    guu cg g
     || ||||||  |||||||| | || |||||||    ||| ||  
     cg gcgaaa  auucguga c cg cguccuc    uaa gc u
-ugag  -      uu        a c  u       --ca   c  c
Get sequence
Deep sequencing
403549 reads, 50 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3R: 9289941-9290033 [-]
sense
FBtr0082792 ; CG17025-RA; intron 1
FBtr0082792 ; CG17025-RA; intron 1
FBtr0082792 ; CG17025-RA; intron 1

Mature sequence dme-miR-252-5p

Accession MIMAT0005516
Previous IDs dme-miR-252
Sequence

16 -  

cuaaguacuagugccgcaggag

 - 37

Get sequence
Deep sequencing 394963 reads, 50 experiments
Evidence experimental; 454 [1-2], Solexa [2]
Predicted targets

Mature sequence dme-miR-252-3p

Accession MIMAT0020896
Sequence

60 -  

uccugcugcccaagugcuuauu

 - 81

Get sequence
Deep sequencing 8514 reads, 41 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).