Stem-loop sequence dme-mir-996

Accession MI0005857
Description Drosophila melanogaster miR-996 stem-loop
Gene family MIPF0000449; mir-996
Stem-loop 
u       u    u  c     a      -      g     ugguuca 
 cugacuc auuu gu ggcga caugga ucuagu cacgg       u
 ||||||| |||| || ||||| |||||| |||||| |||||        
 gacuggg ugaa ua cugcu guacuu agauca gugcu       g
-       u    u  u     c      u      -     ugaauua
Get sequence
Deep sequencing
1279315 reads, 50 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3R: 25042906-25043002 [+]
sense
FBtr0085391 ; CR31044-RA; exon 1
FBtr0085391 ; CR31044-RA; exon 1
FBtr0085391 ; CR31044-RA; exon 1
FBtr0303427 ; CR31044-RC; exon 2
FBtr0303426 ; CR31044-RB; intron 2
FBtr0303427 ; CR31044-RC; exon 2
FBtr0303426 ; CR31044-RB; intron 2
Clustered miRNAs
< 10kb from dme-mir-996
dme-mir-279 3R: 25041307-25041406 [+]
dme-mir-996 3R: 25042906-25043002 [+]

Mature sequence dme-miR-996-5p

Accession MIMAT0020895
Sequence

19 -  

gcgaacauggaucuagugcacg

 - 40

Get sequence
Deep sequencing 31221 reads, 50 experiments
Evidence not experimental
Predicted targets

Mature sequence dme-miR-996-3p

Accession MIMAT0005515
Previous IDs dme-miR-996
Sequence

61 -  

ugacuagauuucaugcucgucu

 - 82

Get sequence
Deep sequencing 1247850 reads, 50 experiments
Evidence experimental; 454 [1-2], Solexa [2]
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).