Stem-loop sequence dme-mir-979

Accession MI0005836
Description Drosophila melanogaster miR-979 stem-loop
Stem-loop 
uacauguga            --uaca    a             cu   g 
         ggaugucacaaa      cuga uuuggggggaauu  uau u
         ||||||||||||      |||| |||||||||||||  |||  
         ccuacgguguuu      gacu aagcccuucuuaa  aua a
-------ug            uaaucg    c             ac   u
Get sequence
Deep sequencing
605 reads, 20 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 19455870-19455964 [+]
antisense
FBtr0074777 ; Grip84-RC; intron 4
FBtr0074777 ; Grip84-RC; intron 4
FBtr0074777 ; Grip84-RC; intron 4
FBtr0301308 ; Grip84-RE; intron 5
FBtr0074776 ; Grip84-RB; intron 5
FBtr0301307 ; Grip84-RD; 3'UTR (exon 5)
FBtr0301308 ; Grip84-RE; intron 5
FBtr0074776 ; Grip84-RB; intron 5
FBtr0301307 ; Grip84-RD; 3'UTR (exon 5)
FBtr0301308 ; Grip84-RE; intron 5
FBtr0074776 ; Grip84-RB; intron 5
FBtr0301307 ; Grip84-RD; 3'UTR (exon 5)
FBtr0074775 ; Grip84-RA; intron 6
FBtr0074775 ; Grip84-RA; intron 6
FBtr0074775 ; Grip84-RA; intron 6
Clustered miRNAs
< 10kb from dme-mir-979
dme-mir-2499 X: 19451041-19451136 [+]
dme-mir-4966 X: 19452403-19452529 [+]
dme-mir-975 X: 19452786-19452876 [+]
dme-mir-976 X: 19452928-19453024 [+]
dme-mir-977 X: 19453055-19453153 [+]
dme-mir-978 X: 19455269-19455360 [+]
dme-mir-979 X: 19455870-19455964 [+]

Mature sequence dme-miR-979-5p

Accession MIMAT0020876
Sequence

23 -  

acacugaauuuggggggaauucu

 - 45

Get sequence
Deep sequencing 58 reads, 12 experiments
Evidence not experimental
Predicted targets

Mature sequence dme-miR-979-3p

Accession MIMAT0005495
Previous IDs dme-miR-979
Sequence

60 -  

uucuucccgaacucaggcuaa

 - 80

Get sequence
Deep sequencing 534 reads, 16 experiments
Evidence experimental; 454 [1]
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).