Stem-loop sequence dme-mir-972

Accession MI0005829
Description Drosophila melanogaster miR-972 stem-loop
Stem-loop 
agaa    -a       u  -         uuu         uaacu 
    ugau  gggaaau gc uaaauauuu   uuguauaaa     u
    ||||  ||||||| || |||||||||   |||||||||      
    acua  cucuuua cg auuuauaag   aacauguuu     u
--aa    aa       -  g         cau         ucaau
Get sequence
Deep sequencing
1268 reads, 25 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 19445185-19445275 [+]
intergenic
Clustered miRNAs
< 10kb from dme-mir-972
dme-mir-972 X: 19445185-19445275 [+]
dme-mir-973 X: 19445561-19445661 [+]
dme-mir-974 X: 19445711-19445811 [+]
dme-mir-2499 X: 19451041-19451136 [+]
dme-mir-4966 X: 19452403-19452529 [+]
dme-mir-975 X: 19452786-19452876 [+]
dme-mir-976 X: 19452928-19453024 [+]
dme-mir-977 X: 19453055-19453153 [+]

Mature sequence dme-miR-972-5p

Accession MIMAT0020869
Sequence

20 -  

uaaauauuuuuuuuguauaaa

 - 40

Get sequence
Deep sequencing 18 reads, 10 experiments
Evidence not experimental
Predicted targets

Mature sequence dme-miR-972-3p

Accession MIMAT0005488
Previous IDs dme-miR-972
Sequence

55 -  

uguacaauacgaauauuuaggc

 - 76

Get sequence
Deep sequencing 1247 reads, 24 experiments
Evidence experimental; 454 [1]
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).