Stem-loop sequence dme-mir-190

Accession MI0005808
Description Drosophila melanogaster miR-190 stem-loop
Gene family MIPF0000076; mir-190
Stem-loop 
cgaacuaauu  u   uc      -            au      u  uuu auu 
          ga ggu  caguga gauauguuugau  ucuugg ug   c   c
          || |||  |||||| ||||||||||||  |||||| ||   |    
          cu cca  gucauu uuauacaaacua  aggacc ac   g   a
--------cg  c   gu      a            --      c  -uu aaa
Get sequence
Deep sequencing
29187 reads, 50 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
3L: 8564899-8564998 [+]
sense
FBtr0076627 ; rhea-RA; intron 12
FBtr0076627 ; rhea-RA; intron 12
FBtr0076627 ; rhea-RA; intron 12
FBtr0305210 ; rhea-RB; intron 14
FBtr0305210 ; rhea-RB; intron 14

Mature sequence dme-miR-190-5p

Accession MIMAT0005467
Previous IDs dme-miR-190
Sequence

24 -  

agauauguuugauauucuugguug

 - 47

Get sequence
Deep sequencing 25993 reads, 48 experiments
Evidence experimental; 454 [1-2], Solexa [2]
Predicted targets

Mature sequence dme-miR-190-3p

Accession MIMAT0020848
Sequence

65 -  

cccaggaaucaaacauauuauu

 - 86

Get sequence
Deep sequencing 3149 reads, 48 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).