Stem-loop sequence hsa-mir-942

Accession

MI0005767

Symbol

HGNC:MIR942

Description

Homo sapiens miR-942 stem-loop

Gene family

MIPF0000511; mir-942

Stem-loop

            u                       uacuca 
auuaggagagua cuucucuguuuuggccaugugug      c
|||||||||||| |||||||||||||||||||||||       
uaauccuuucau gaagagacaaagccgguacacac      a
            u                       uccccg 

Deep sequencing

105 reads, 16 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 117637265-117637350 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000033314 ; TTF2-003; intron 1

  OTTHUMT00000033314 ; TTF2-003; intron 1

  OTTHUMT00000033314 ; TTF2-003; intron 1

  OTTHUMT00000033277 ; TTF2-001; intron 18

  OTTHUMT00000033277 ; TTF2-001; intron 18

  OTTHUMT00000033277 ; TTF2-001; intron 18

  ENST00000492682 ; TTF2-003; intron 1

  ENST00000492682 ; TTF2-003; intron 1

  ENST00000492682 ; TTF2-003; intron 1

  ENST00000369466 ; TTF2-001; intron 18

  ENST00000369466 ; TTF2-001; intron 18

  ENST00000369466 ; TTF2-001; intron 18

Database links

• ENTREZGENE: 100126331;MIR942
• HGNC: 33688;MIR942

Mature sequence hsa-miR-942

• Accession: MIMAT0004985
• Sequence: 13 - ucuucucuguuuuggccaugug - 34
• Deep sequencing: 89 reads, 12 experiments
• Evidence: experimental; cloned [1]
• Validated targets:
  • MIRTARBASE:hsa-miR-942
  • TARBASE:hsa-miR-942
• Predicted targets:
  • DIANA-MICROT:hsa-miR-942
  • MICRORNA.ORG:hsa-miR-942
  • MIRDB:hsa-miR-942
  • RNA22-HSA:hsa-miR-942
  • TARGETMINER:hsa-miR-942
  • TARGETSCAN-VERT:hsa-miR-942

References

1. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).