Stem-loop sequence hsa-mir-941-1

Accession

MI0005763

Symbol

HGNC:MIR941-1

Description

Homo sapiens miR-941-1 stem-loop

Gene family

MIPF0000387; mir-941

Stem-loop

cacggaaga  -acaca     -  g  u  -        c  g    c   aca   -  a g 
         gg      cccgg cu ug gg acaugugc ca ggcc ggg   gcg cc c g
         ||      ||||| || || || |||||||| || |||| |||   ||| || |  
         cc      gggcc gg ac cc uguacacg gu ucgg ccc   cgc gg g a
-----ggca  gcgaca     c  g  -  g        u  g    -   --a   a  a a 

Deep sequencing

1090 reads, 32 experiments

Genome context

• Coordinates (GRCh37.p5): chr20: 62550778-62550894 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000080244 ; DNAJC5-001; intron 1

  OTTHUMT00000080245 ; DNAJC5-002; intron 1

  OTTHUMT00000080244 ; DNAJC5-001; intron 1

  OTTHUMT00000080245 ; DNAJC5-002; intron 1

  OTTHUMT00000080244 ; DNAJC5-001; intron 1

  OTTHUMT00000080245 ; DNAJC5-002; intron 1

  ENST00000360864 ; DNAJC5-001; intron 1

  ENST00000470551 ; DNAJC5-002; intron 1

  ENST00000369911 ; DNAJC5-201; intron 1

  ENST00000360864 ; DNAJC5-001; intron 1

  ENST00000470551 ; DNAJC5-002; intron 1

  ENST00000369911 ; DNAJC5-201; intron 1

  ENST00000401345 ; AL118506.2-201; exon 1

  ENST00000401322 ; MIR941-4-201; exon 1

  ENST00000360864 ; DNAJC5-001; intron 1

  ENST00000470551 ; DNAJC5-002; intron 1

  ENST00000369911 ; DNAJC5-201; intron 1

  ENST00000401322 ; MIR941-4-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-941-1

• hsa-mir-941-1: chr20: 62550778-62550894 [+]
• hsa-mir-941-3: chr20: 62551085-62551201 [+]

Database links

• ENTREZGENE: 100126329;MIR941-1
• HGNC: 33684;MIR941-1

Mature sequence hsa-miR-941

• Accession: MIMAT0004984
• Sequence: 71 - cacccggcugugugcacaugugc - 93
• Deep sequencing: 2810 reads, 18 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-941
  • MICRORNA.ORG:hsa-miR-941
  • MIRDB:hsa-miR-941
  • RNA22-HSA:hsa-miR-941
  • TARGETMINER:hsa-miR-941
  • TARGETSCAN-VERT:hsa-miR-941

References

1. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).
2. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).