Stem-loop sequence hsa-mir-940

Accession MI0005762
Symbol HGNC:MIR940
Description Homo sapiens miR-940 stem-loop
Gene family MIPF0000540; mir-940
Stem-loop 
   a   g         cccca         -   gg  -ag  --  gug 
gug ggu ugggcccgg     ggagcgggg ccu  gc   cc  cc   u
||| ||| |||||||||     ||||||||| |||  ||   ||  ||   g
cac cca guccgggcc     ccucgcccc ggg  cg   gg  gg   u
   c   -         -----         c   -a  gaa  aa  agu
Get sequence
Deep sequencing
520 reads, 27 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 2321748-2321841 [+]
sense
OTTHUMT00000435436 ; RP11-304L19.13-002; intron 1
OTTHUMT00000435437 ; RP11-304L19.13-003; intron 1
OTTHUMT00000435436 ; RP11-304L19.13-002; intron 1
OTTHUMT00000435437 ; RP11-304L19.13-003; intron 1
OTTHUMT00000435438 ; RP11-304L19.13-001; exon 2
OTTHUMT00000435438 ; RP11-304L19.13-001; exon 2
ENST00000563734 ; RP11-304L19.13-002; intron 1
ENST00000567888 ; RP11-304L19.13-003; intron 1
ENST00000563734 ; hsa-mir-940.1-002; intron 1
ENST00000567888 ; hsa-mir-940.1-003; intron 1
ENST00000562838 ; RP11-304L19.13-001; exon 2
ENST00000562838 ; hsa-mir-940.1-001; exon 2
Clustered miRNAs
< 10kb from hsa-mir-940
hsa-mir-3677 chr16: 2320714-2320773 [+]
hsa-mir-940 chr16: 2321748-2321841 [+]
hsa-mir-4717 chr16: 2324621-2324692 [+]
Database links

Mature sequence hsa-miR-940

Accession MIMAT0004983
Sequence

60 -  

aaggcagggcccccgcucccc

 - 80

Get sequence
Deep sequencing 504 reads, 24 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).