Stem-loop sequence hsa-mir-939

Accession MI0005761
Symbol HGNC:MIR939
Description Homo sapiens miR-939 stem-loop
Gene family MIPF0000490; mir-939
Stem-loop 
u    gca    c         u     u ug   gu   c 
 gugg   gggc cuggggagc gaggc c  ggg  ggc g
 ||||   |||| ||||||||| ||||| |  |||  |||  
 cgcc   ucug gaccccucg cuccg g  ccc  ucg g
g    -ag    u         u     - gu   ag   g
Get sequence
Deep sequencing
19 reads, 10 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr8: 145619364-145619445 [-]
sense
OTTHUMT00000382423 ; CPSF1-004; exon 1
OTTHUMT00000382423 ; CPSF1-004; exon 1
OTTHUMT00000382423 ; CPSF1-004; exon 1
OTTHUMT00000382806 ; CPSF1-012; exon 2
OTTHUMT00000382806 ; CPSF1-012; exon 2
OTTHUMT00000382805 ; CPSF1-010; exon 3
OTTHUMT00000382424 ; CPSF1-005; exon 3
OTTHUMT00000382805 ; CPSF1-010; exon 3
OTTHUMT00000382424 ; CPSF1-005; exon 3
OTTHUMT00000382807 ; CPSF1-013; exon 4
OTTHUMT00000382807 ; CPSF1-013; exon 4
OTTHUMT00000382422 ; CPSF1-001; exon 34
OTTHUMT00000382422 ; CPSF1-001; exon 34
ENST00000532725 ; CPSF1-004; exon 1
ENST00000532725 ; CPSF1-004; exon 1
ENST00000532725 ; CPSF1-004; exon 1
ENST00000531727 ; CPSF1-012; exon 2
ENST00000531727 ; CPSF1-012; exon 2
ENST00000531480 ; CPSF1-010; exon 3
ENST00000526271 ; CPSF1-005; exon 3
ENST00000531480 ; CPSF1-010; exon 3
ENST00000526271 ; CPSF1-005; exon 3
ENST00000532935 ; CPSF1-013; exon 4
ENST00000532935 ; CPSF1-013; exon 4
ENST00000349769 ; CPSF1-001; exon 34
ENST00000349769 ; CPSF1-001; exon 34
Clustered miRNAs
< 10kb from hsa-mir-939
hsa-mir-1234 chr8: 145625476-145625559 [-]
hsa-mir-939 chr8: 145619364-145619445 [-]
Database links

Mature sequence hsa-miR-939-5p

Accession MIMAT0004982
Previous IDs hsa-miR-939
Sequence

15 -  

uggggagcugaggcucugggggug

 - 38

Get sequence
Deep sequencing 17 reads, 9 experiments
Evidence experimental; cloned [1]
Validated targets
Predicted targets

Mature sequence hsa-miR-939-3p

Accession MIMAT0022939
Sequence

50 -  

cccugggccucugcuccccag

 - 70

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence not experimental

References

1
PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).