Stem-loop sequence cre-MIR918

Accession MI0005697
Description Chlamydomonas reinhardtii miR918 stem-loop
Gene family MIPF0000374; MIR918
Stem-loop 
     a  a         a                 a  g      - guag            gg                   c   a         c    a  c                         c 
ccaau cg gacgucugc ccgcacaugucucagga ga aucguc c    uagcaagcugcu  aggguaucucggucagcau ucg uuggcaaga gucc cu cggguacgcgccgcucaugcgauga g
||||| || ||||||||| ||||||||||||||||| || |||||| |    ||||||||||||  ||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||||||||||| c
gguua gc cugcagacg ggcguguacagaguccu cu uagcgg g    aucguucgauga  ucccauagagccagucgua agc aaccguucu cagg ga guccaugugcggcgagugcgcuacu c
     c  c         c                 c  g      u -aua            ag                   a   a         a    c  a                         u
Get sequence
Deep sequencing
24 reads, 1 experiments
Genome context
Coordinates (CHLRE3.1) Overlapping transcripts
scaffold_6: 1014118-1014386 [+]
intergenic
Clustered miRNAs
< 10kb from cre-MIR918
cre-MIR918 scaffold_6: 1014118-1014386 [+]
cre-MIR919 scaffold_6: 1014120-1014384 [-]

Mature sequence cre-miR918

Accession MIMAT0004385
Sequence

157 -  

uaccugaagcggacaucuugc

 - 177

Get sequence
Evidence experimental; cloned [1]

References

1
PMID:17470535 "A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii" Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y Genes Dev. 21:1190-1203(2007).