Stem-loop sequence ppt-MIR477c

Accession MI0005671
Previous IDs ppt-MIR473a
Description Physcomitrella patens miR477c stem-loop
Gene family MIPF0000216; MIR477
Stem-loop 
gu  a          c cu            a   c   uuu 
  ug uuuuuccucu c  caaaggcuucca cgu cuu   g
  || |||||||||| |  |||||||||||| ||| |||   u
  ac aaggaggaga g  guuucugaaggu gca gaa   g
--  a          a uu            c   c   cga
Get sequence
Deep sequencing
8997 reads, 3 experiments
Comments

This sequence was named miR473a in [1]. The miR477 family contains miRNAs previously called miR473, miR1210 and miR1213 here. The names and sequences are rationalised in [2]. The mature sequence shown here is the most abundant clone by deep-sequencing [2].

Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_50: 2006194-2006278 [+]
intergenic

Mature sequence ppt-miR477c

Accession MIMAT0004359
Previous IDs ppt-miR473a
Sequence

12 -  

cucucccucaaaggcuucca

 - 31

Get sequence
Deep sequencing 8296 reads, 3 experiments
Evidence experimental; Northern [1], 454 [2], cloned [2]

References

1
PMID:17359535 "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution" Fattash I, Voss B, Reski R, Hess WR, Frank W BMC Plant Biol. 7:13(2007).
2
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).