Stem-loop sequence ppt-MIR414

Accession MI0005669
Description Physcomitrella patens miR414 stem-loop
Gene family MIPF0000375; MIR414
Stem-loop 
----------------------------a    uuc    -acaauua    a   caaugcuagaauguggggcucaccagauuuuccaacugcauuggcua 
                             gacg   aaga        gaga gac                                               g
                             ||||   ||||        |||| |||                                                
                             cugc   uucu        uucu cug                                               c
gacuacgacuccugcuccuacuacuccua    ---    acuacugc    a   cuacuacuucuacuguuucuauaccaaugacgguuucgcgaucgucu
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Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_123: 538836-539011 [-]
intergenic

Mature sequence ppt-miR414

Accession MIMAT0004357
Sequence

146 -  

ucauccucaucauccucgucc

 - 166

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Evidence experimental; Northern [1]

References

1
PMID:17359535 "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution" Fattash I, Voss B, Reski R, Hess WR, Frank W BMC Plant Biol. 7:13(2007).
2
PMID:16669754 "MicroRNAS and their regulatory roles in plants" Jones-Rhoades MW, Bartel DP, Bartel B Annu Rev Plant Biol. 57:19-53(2006).