Stem-loop sequence mtr-MIR156h

AccessionMI0005613
DescriptionMedicago truncatula miR156h stem-loop
Gene family MIPF0000008; MIR156
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-156_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

MicroRNA (miRNA) precursor mir-156 is a family of plant non-coding RNA. This microRNA has now been predicted or experimentally confirmed in a range of plant species (MIPF0000008). Animal miRNAs are transcribed as ~70 nucleotide precursors and subsequently processed by the Dicer enzyme to give a ~22 nucleotide product. In plants the precursor sequences may be longer, and the carpel factory (caf) enzyme appears to be involved in processing. In this case the mature sequence comes from the 5' arm of the precursor, and both Arabidopsis thaliana and rice genomes contain a number of related miRNA precursors which give rise to almost identical mature sequences. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA.

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Stem-loop
   ugc  u          -             -u     a    --a  g 
5'    ug ugacagaaga uagagagcacaga  gauga augc   ug a
      || |||||||||| |||||||||||||  ||||| ||||   || a
3'    ac acugucuucu auuucucguguuu  uuacu uacg   ac g
   -cc  u          u             cc     c    gua  g 
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Confidence
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Genome context
Coordinates (JCVI_Mt3.5.2) Overlapping transcripts
chr7: 24257584-24257677 [+]
intergenic

Mature sequence mtr-miR156h-5p

Accession MIMAT0011099
Sequence

6 - 

uugacagaagauagagagcac

 - 26

Get sequence
Evidence experimental; 454 [2], Northern [2], Illumina [3]
Validated targets

Mature sequence mtr-miR156h-3p

Accession MIMAT0026729
Sequence

71 - 

gcucuuuauucuucugucauc

 - 91

Get sequence
Evidence experimental; Illumina [3]

References

1
" Bonnet E Unpublished (2007).
2
PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).
3
PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).