Stem-loop sequence hsa-mir-873

Accession MI0005564
Symbol HGNC:MIR873
Description Homo sapiens miR-873 stem-loop
Gene family MIPF0000390; mir-873
Stem-loop 
--   u ca   g a      ug g        a  ga 
  gug g  uuu c ggaacu  u agucuccu uu  a
  ||| |  ||| | ||||||  | |||||||| ||  a
  cac c  aag g ccuuga  a ucagagga aa  a
aa   c ac   g c      gu g        c  gu
Get sequence
Deep sequencing
2271 reads, 15 experiments
Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was later confirmed by cloning [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr9: 28888877-28888953 [-]
intergenic
Database links

Mature sequence hsa-miR-873-5p

Accession MIMAT0004953
Previous IDs hsa-miR-873
Sequence

11 -  

gcaggaacuugugagucuccu

 - 31

Get sequence
Deep sequencing 1921 reads, 14 experiments
Evidence experimental; cloned [2]
Predicted targets

Mature sequence hsa-miR-873-3p

Accession MIMAT0022717
Sequence

46 -  

ggagacugaugaguucccggga

 - 67

Get sequence
Deep sequencing 350 reads, 11 experiments
Evidence not experimental
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).