Stem-loop sequence hsa-mir-877

Accession MI0005561
Symbol HGNC:MIR877
Description Homo sapiens miR-877 stem-loop
Gene family MIPF0000392; mir-877
Stem-loop 
-gua      au  c c          g caaagac         c 
    gaggag  gg g aggggacacg g       uuggggguu c
    ||||||  || | |||||||||| |       ||||||||| u
    cuccuc  cc c ucuccugugu c       gacucccag g
gacc      --  u u          g ------a         g
Get sequence
Deep sequencing
3404 reads, 21 experiments
Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was later confirmed by cloning [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr6: 30552109-30552194 [+]
sense
OTTHUMT00000076139 ; ABCF1-004; intron 4
OTTHUMT00000076139 ; ABCF1-004; intron 4
OTTHUMT00000076139 ; ABCF1-004; intron 4
OTTHUMT00000256168 ; ABCF1-005; intron 5
OTTHUMT00000256168 ; ABCF1-005; intron 5
OTTHUMT00000256168 ; ABCF1-005; intron 5
OTTHUMT00000076136 ; ABCF1-002; intron 12
OTTHUMT00000076136 ; ABCF1-002; intron 12
OTTHUMT00000076136 ; ABCF1-002; intron 12
OTTHUMT00000076137 ; ABCF1-001; intron 13
OTTHUMT00000076137 ; ABCF1-001; intron 13
OTTHUMT00000076137 ; ABCF1-001; intron 13
ENST00000396515 ; ABCF1-004; intron 4
ENST00000396515 ; ABCF1-004; intron 4
ENST00000396515 ; ABCF1-004; intron 4
ENST00000475993 ; ABCF1-005; intron 5
ENST00000475993 ; ABCF1-005; intron 5
ENST00000475993 ; ABCF1-005; intron 5
ENST00000376545 ; ABCF1-002; intron 12
ENST00000376545 ; ABCF1-002; intron 12
ENST00000376545 ; ABCF1-002; intron 12
ENST00000326195 ; ABCF1-001; intron 13
ENST00000326195 ; ABCF1-001; intron 13
ENST00000326195 ; ABCF1-001; intron 13
ENST00000455943 ; ABCF1-201; intron 14
ENST00000455943 ; ABCF1-201; intron 14
Database links

Mature sequence hsa-miR-877-5p

Accession MIMAT0004949
Previous IDs hsa-miR-877
Sequence

1 -  

guagaggagauggcgcaggg

 - 20

Get sequence
Deep sequencing 3392 reads, 19 experiments
Evidence experimental; cloned [1-3]
Predicted targets

Mature sequence hsa-miR-877-3p

Accession MIMAT0004950
Previous IDs hsa-miR-877*
Sequence

66 -  

uccucuucucccuccucccag

 - 86

Get sequence
Deep sequencing 6 reads, 4 experiments
Evidence experimental; cloned [1-3]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).