Stem-loop sequence hsa-mir-744

Accession MI0005559
Symbol HGNC:MIR744
Description Homo sapiens miR-744 stem-loop
Gene family MIPF0000431; mir-744
Stem-loop 
--     c     gc    c   -   u       gucuuacugaagguu 
  uuggg aaggu  gggg uag ggc aacagca               u
  ||||| |||||  |||| ||| ||| |||||||               c
  ggcuc uucca  cucc auc ccg uugucgu               c
cu     a     -a    a   a   -       acacgcaccaaaggu
Get sequence
Deep sequencing
17024 reads, 34 experiments
Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was later confirmed by cloning [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr17: 11985216-11985313 [+]
sense
OTTHUMT00000442023 ; MAP2K4-010; intron 1
OTTHUMT00000442024 ; MAP2K4-009; intron 1
OTTHUMT00000441229 ; MAP2K4-003; intron 2
OTTHUMT00000441226 ; MAP2K4-001; intron 3
OTTHUMT00000441228 ; MAP2K4-006; intron 3
OTTHUMT00000441227 ; MAP2K4-002; intron 4
ENST00000582183 ; MAP2K4-010; intron 1
ENST00000579089 ; MAP2K4-009; intron 1
ENST00000581941 ; MAP2K4-003; intron 2
ENST00000353533 ; MAP2K4-201; intron 3
ENST00000353533 ; MAP2K4-201; intron 3
ENST00000353533 ; MAP2K4-001; intron 3
ENST00000582897 ; MAP2K4-006; intron 3
ENST00000415385 ; MAP2K4-202; intron 4
ENST00000415385 ; MAP2K4-202; intron 4
ENST00000415385 ; MAP2K4-002; intron 4
ENST00000538465 ; MAP2K4-204; intron 5
ENST00000538465 ; MAP2K4-204; intron 5
Database links

Mature sequence hsa-miR-744-5p

Accession MIMAT0004945
Previous IDs hsa-miR-744
Sequence

11 -  

ugcggggcuagggcuaacagca

 - 32

Get sequence
Deep sequencing 17021 reads, 33 experiments
Evidence experimental; cloned [2]
Validated targets
Predicted targets

Mature sequence hsa-miR-744-3p

Accession MIMAT0004946
Previous IDs hsa-miR-744*
Sequence

68 -  

cuguugccacuaaccucaaccu

 - 89

Get sequence
Deep sequencing 3 reads, 2 experiments
Evidence experimental; cloned [2]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).