Stem-loop sequence hsa-mir-190b

Accession

MI0005545

Symbol

HGNC:MIR190B

Description

Homo sapiens miR-190b stem-loop

Gene family

MIPF0000076; mir-190

Stem-loop

-    u     -u               g     -   aa 
 ugcu cugug  gauauguuugauauu gguug uuu  u
 |||| |||||  ||||||||||||||| ||||| |||   
 acga gacau  uuauacaaacuguaa ucaac aag  u
g    c     uc               a     c   ga 

Deep sequencing

59 reads, 11 experiments

Genome context

• Coordinates (GRCh37.p5): chr1: 154166141-154166219 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000360298 ; TPM3-018; intron 1

  OTTHUMT00000360298 ; TPM3-018; intron 1

  OTTHUMT00000360298 ; TPM3-018; intron 1

  ENST00000515609 ; TPM3-018; intron 1

  ENST00000515609 ; TPM3-018; intron 1

  ENST00000515609 ; TPM3-018; intron 1

Database links

• ENTREZGENE: 100126346;MIR190B
• HGNC: 33656;MIR190B

Mature sequence hsa-miR-190b

• Accession: MIMAT0004929
• Sequence: 11 - ugauauguuugauauuggguu - 31
• Deep sequencing: 59 reads, 11 experiments
• Evidence: by similarity; MI0005478
• Predicted targets:
  • DIANA-MICROT:hsa-miR-190b
  • MICRORNA.ORG:hsa-miR-190b
  • MIRDB:hsa-miR-190b
  • RNA22-HSA:hsa-miR-190b
  • TARGETMINER:hsa-miR-190b
  • TARGETSCAN-VERT:hsa-miR-190b

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).