Stem-loop sequence hsa-mir-889

Accession MI0005540
Symbol HGNC:MIR889
Description Homo sapiens miR-889 stem-loop
Gene family MIPF0000514; mir-889
Stem-loop 
--     u   g     c      uagua     -  uau 
  gugcu aaa aaugg uguccg     ugguc uc   a
  ||||| ||| ||||| ||||||     ||||| ||   u
  uauga uuu uuacc acaggc     auuag ag   u
cc     u   g     a      -uaua     u  uau
Get sequence
Deep sequencing
1297 reads, 4 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101514238-101514316 [+]
sense
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; MIR381HG-001; intron 1
Clustered miRNAs
< 10kb from hsa-mir-889
hsa-mir-376c chr14: 101506027-101506092 [+]
hsa-mir-376a-2 chr14: 101506406-101506485 [+]
hsa-mir-654 chr14: 101506556-101506636 [+]
hsa-mir-376b chr14: 101506773-101506872 [+]
hsa-mir-376a-1 chr14: 101507119-101507186 [+]
hsa-mir-300 chr14: 101507700-101507782 [+]
hsa-mir-1185-1 chr14: 101509314-101509399 [+]
hsa-mir-1185-2 chr14: 101510535-101510620 [+]
hsa-mir-381 chr14: 101512257-101512331 [+]
hsa-mir-487b chr14: 101512792-101512875 [+]
hsa-mir-539 chr14: 101513658-101513735 [+]
hsa-mir-889 chr14: 101514238-101514316 [+]
hsa-mir-544a chr14: 101514995-101515085 [+]
hsa-mir-655 chr14: 101515887-101515983 [+]
hsa-mir-487a chr14: 101518783-101518862 [+]
hsa-mir-382 chr14: 101520643-101520718 [+]
hsa-mir-134 chr14: 101521024-101521096 [+]
hsa-mir-668 chr14: 101521595-101521660 [+]
hsa-mir-485 chr14: 101521756-101521828 [+]
hsa-mir-323b chr14: 101522556-101522637 [+]
Database links

Mature sequence hsa-miR-889

Accession MIMAT0004921
Sequence

49 -  

uuaauaucggacaaccauugu

 - 69

Get sequence
Deep sequencing 1297 reads, 4 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).