Stem-loop sequence hsa-mir-541

Accession

MI0005539

Symbol

HGNC:MIR541

Description

Homo sapiens miR-541 stem-loop

Gene family

MIPF0000213; mir-541

Stem-loop

-   -u     aaa        c    g uc      caaa      
 acg  caggg   ggauucug uguc g  ccacuc    guuca 
 |||  |||||   |||||||| |||| |  ||||||    |||| c
 ugu  gucuc   ucuaagac acgg u  gguggg    uaaga 
g   uc     agg        -    g --      ----      

Deep sequencing

12 reads, 2 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 101530832-101530915 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-541

• hsa-mir-134: chr14: 101521024-101521096 [+]
• hsa-mir-668: chr14: 101521595-101521660 [+]
• hsa-mir-485: chr14: 101521756-101521828 [+]
• hsa-mir-323b: chr14: 101522556-101522637 [+]
• hsa-mir-154: chr14: 101526092-101526175 [+]
• hsa-mir-496: chr14: 101526910-101527011 [+]
• hsa-mir-377: chr14: 101528387-101528455 [+]
• hsa-mir-541: chr14: 101530832-101530915 [+]
• hsa-mir-409: chr14: 101531637-101531715 [+]
• hsa-mir-412: chr14: 101531784-101531874 [+]
• hsa-mir-369: chr14: 101531935-101532004 [+]
• hsa-mir-410: chr14: 101532249-101532328 [+]
• hsa-mir-656: chr14: 101533061-101533138 [+]

Database links

• ENTREZGENE: 100126308;MIR541
• HGNC: 33650;MIR541

Mature sequence hsa-miR-541-5p

• Accession: MIMAT0004919
• Previous IDs: hsa-miR-541*
• Sequence: 10 - aaaggauucugcugucggucccacu - 34
• Deep sequencing: 12 reads, 2 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-541-5p
  • MICRORNA.ORG:hsa-miR-541-5p
  • MIRDB:hsa-miR-541-5p
  • RNA22-HSA:hsa-miR-541-5p
  • TARGETMINER:hsa-miR-541-5p

Mature sequence hsa-miR-541-3p

• Accession: MIMAT0004920
• Previous IDs: hsa-miR-541
• Sequence: 54 - uggugggcacagaaucuggacu - 75
• Evidence: experimental; cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-541-3p
  • MICRORNA.ORG:hsa-miR-541-3p
  • MIRDB:hsa-miR-541-3p
  • RNA22-HSA:hsa-miR-541-3p
  • TARGETMINER:hsa-miR-541-3p
  • TARGETSCAN-VERT:hsa-miR-541

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).