Stem-loop sequence mmu-mir-466e

Accession

MI0005506

Symbol

MGI:Mir466e

Description

Mus musculus miR-466e stem-loop

Gene family

MIPF0000208; mir-466

Stem-loop

--gu         -g          ac     ca      aau 
    guauguguu  augugugugu  augua  uaugug   a
    |||||||||  ||||||||||  |||||  ||||||   u
    uauacacag  uacacacgca  uacau  auacau   g
cgag         aa          ca     --      aua 

Deep sequencing

9988 reads, 85 experiments

Genome context

• Coordinates (GRCm38): chr2: 10479088-10479171 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000103910 ; mmu-mir-466e.2-201; exon 1

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-466e

• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]
• mmu-mir-466c-2: chr2: 10483966-10484055 [+]
• mmu-mir-669a-6: chr2: 10484196-10484282 [+]
• mmu-mir-467a-4: chr2: 10486135-10486217 [+]
• mmu-mir-466b-4: chr2: 10486423-10486512 [+]
• mmu-mir-669a-7: chr2: 10486653-10486739 [+]
• mmu-mir-467a-5: chr2: 10488599-10488681 [+]
• mmu-mir-466b-5: chr2: 10488887-10488974 [+]

Database links

• ENTREZGENE: 100316647;Mir466e
• MGI: 3719617;Mir466e

Mature sequence mmu-miR-466e-5p

• Accession: MIMAT0004879
• Sequence: 12 - gauguguguguacauguacaua - 33
• Deep sequencing: 3337 reads, 71 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-466e-5p
  • MICRORNA.ORG:mmu-miR-466e-5p
  • MIRDB:mmu-miR-466e-5p
  • RNA22-MMU:mmu-miR-466e-5p
  • TARGETSCAN-VERT:mmu-miR-466e-5p

Mature sequence mmu-miR-466e-3p

• Accession: MIMAT0004880
• Sequence: 51 - uauacauacacgcacacauaaga - 73
• Deep sequencing: 6500 reads, 76 experiments
• Evidence: experimental; cloned [1], Solexa [2-3]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-466e-3p
  • MICRORNA.ORG:mmu-miR-466e-3p
  • MIRDB:mmu-miR-466e-3p
  • RNA22-MMU:mmu-miR-466e-3p
  • TARGETSCAN-VERT:mmu-miR-466e-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).