Stem-loop sequence mmu-mir-421

Accession MI0005496
Symbol MGI:Mir421
Description Mus musculus miR-421 stem-loop
Gene family MIPF0000098; mir-95
Stem-loop 
-  uu      -    uua            a   aaa 
 ca  guaggc cuca   aauguuuguuga uga   a
 ||  |||||| ||||   |||||||||||| |||   a
 gu  cguccg gggu   uuacagacaacu acu   u
u  cu      c    uaa            -   aag
Get sequence
Deep sequencing
54662 reads, 92 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chrX: 103572921-103572996 [-]
sense
OTTMUST00000044290 ; RP23-423B1.2-002; intron 9
OTTMUST00000044239 ; RP23-423B1.2-001; intron 10
OTTMUST00000044293 ; RP23-423B1.2-005; intron 10
OTTMUST00000044291 ; RP23-423B1.2-003; intron 10
ENSMUST00000083575 ; Mir421-201; exon 1
ENSMUST00000130063 ; B230206F22Rik-002; intron 9
ENSMUST00000156211 ; B230206F22Rik-001; intron 10
ENSMUST00000145803 ; B230206F22Rik-005; intron 10
ENSMUST00000156240 ; B230206F22Rik-003; intron 10
Clustered miRNAs
< 10kb from mmu-mir-421
mmu-mir-374c chrX: 103573085-103573133 [+]
mmu-mir-374b chrX: 103573060-103573154 [-]
mmu-mir-421 chrX: 103572921-103572996 [-]
Database links

Mature sequence mmu-miR-421-5p

Accession MIMAT0017273
Previous IDs mmu-miR-421*
Sequence

11 -  

cucauuaaauguuuguugaau

 - 31

Get sequence
Deep sequencing 63 reads, 23 experiments
Evidence experimental; Solexa [3]
Predicted targets

Mature sequence mmu-miR-421-3p

Accession MIMAT0004869
Previous IDs mmu-miR-421
Sequence

45 -  

aucaacagacauuaauugggcgc

 - 67

Get sequence
Deep sequencing 10232 reads, 77 experiments
Evidence experimental; cloned [1], Solexa [2-3]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).