Stem-loop sequence mmu-mir-297c

Accession MI0005492
Symbol MGI:Mir297c
Description Mus musculus miR-297c stem-loop
Gene family MIPF0000204; mir-297
Stem-loop 
----c       aua          ca    --------ca            aa 
     ugugugu   uguaugugug  ugua          uguguguauaug  u
     |||||||   ||||||||||  ||||          ||||||||||||   
     acacaca   acauacguac  acau          acauacauauac  a
uaaaa       --a          aa    acccauacac            au
Get sequence
Deep sequencing
8220 reads, 84 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10509016-10509113 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-297c
mmu-mir-669a-11 chr2: 10501339-10501425 [+]
mmu-mir-467a-10 chr2: 10503273-10503355 [+]
mmu-mir-466b-3 chr2: 10503565-10503645 [+]
mmu-mir-669a-12 chr2: 10503791-10503877 [+]
mmu-mir-467e chr2: 10505721-10505807 [+]
mmu-mir-466p chr2: 10506006-10506094 [+]
mmu-mir-467d chr2: 10507630-10507714 [+]
mmu-mir-466a chr2: 10507918-10507990 [+]
mmu-mir-297c chr2: 10509016-10509113 [+]
mmu-mir-669c chr2: 10509296-10509404 [+]
mmu-mir-669a-2 chr2: 10510164-10510260 [+]
mmu-mir-297b chr2: 10511667-10511775 [+]
mmu-mir-466d chr2: 10511967-10512062 [+]
mmu-mir-669m-1 chr2: 10512790-10512887 [+]
mmu-mir-669m-2 chr2: 10513434-10513531 [+]
mmu-mir-466n chr2: 10513741-10513834 [+]
mmu-mir-669o chr2: 10514300-10514395 [+]
mmu-mir-466g chr2: 10514595-10514674 [+]
mmu-mir-466h chr2: 10514891-10514971 [+]
mmu-mir-297a-3 chr2: 10515820-10515921 [+]
mmu-mir-466l chr2: 10516097-10516217 [+]
mmu-mir-297a-4 chr2: 10517067-10517164 [+]
mmu-mir-669i chr2: 10517604-10517730 [+]
mmu-mir-669h chr2: 10518155-10518279 [+]
Database links

Mature sequence mmu-miR-297c-5p

Accession MIMAT0004865
Previous IDs mmu-miR-297c
Sequence

11 -  

auguaugugugcauguacaugu

 - 32

Get sequence
Deep sequencing 4463 reads, 64 experiments
Evidence experimental; cloned [1], Solexa [2-3]
Predicted targets

Mature sequence mmu-miR-297c-3p

Accession MIMAT0004866
Previous IDs mmu-miR-297c*
Sequence

50 -  

uauacauacacacauacccaua

 - 71

Get sequence
Deep sequencing 3701 reads, 60 experiments
Evidence experimental; cloned [1], Solexa [2-3]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).