Stem-loop sequence bta-let-7b

Accession MI0005453
Description Bos taurus let-7b stem-loop
Gene family MIPF0000002; let-7
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled let-7_microRNA_precursor. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The Let-7 microRNA precursor was identified from a study of developmental timing in C. elegans, and was later shown to be part of a much larger class of non-coding RNAs termed microRNAs. miR-98 microRNA precursor from human is a let-7 family member. Let-7 miRNAs have now been predicted or experimentally confirmed in a wide range of species (MIPF000002). miRNAs are initially transcribed in long transcripts (up to several hundred nucleotides) called primary miRNAs (pri-miRNAs), which are processed in the nucleus by Drosha and Pasha to hairpin structures of about ~70 nucleotide. These precursors (pre-miRNAs) are exported to the cytoplasm by exportin5, where they are subsequently processed by the enzyme Dicer to a ~22 nucleotide mature miRNA. The involvement of Dicer in miRNA processing demonstrates a relationship with the phenomenon of RNA interference.

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Stem-loop
cgg  u                     ucaggguagugaug 
   gg gagguaguagguugugugguu              u
   || |||||||||||||||||||||              u
   cc uuccgucauccaacauaucaa              g
---  -                     uagaaggcuccccc 
Get sequence
Comments

The 3' end of the bovine let-7b hairpin precursor falls in a gap in the genome assembly. The sequence shown here is predicted from human.

Genome context
Coordinates (UMD3.1) Overlapping transcripts
chr5: 117120185-117120265 [+]
antisense
Clustered miRNAs
< 10kb from bta-let-7b
bta-let-7a-3 chr5: 117119385-117119458 [+]
bta-mir-2443 chr5: 117119640-117119712 [+]
bta-let-7b chr5: 117120185-117120265 [+]
bta-mir-3596 chr5: 117120188-117120270 [-]
Database links

Mature sequence bta-let-7b

Accession MIMAT0004331
Sequence

6 - 

ugagguaguagguugugugguu

 - 27

Get sequence
Evidence experimental; cloned [1-2]
Predicted targets

References

1
2
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).