Stem-loop sequence ath-MIR863

Accession MI0005440
Description Arabidopsis thaliana miR863 stem-loop
Stem-loop 
   auaag                       gggg           c             a       a      a  c                       a        u              gaa       aaca      ---     a 
cuc     auguagaaacuagagaagaguuu    gaaaacucuuu uuaugucuuguug ucucaau gcauug ua aauguauauauaugcaauuuaga uauguuuu ccuaauuugaauaa   auagaua    ugaaua   aguau u
|||     |||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||   |||||||    ||||||   |||||  
gag     uacaucuuugaucuuuuuucaaa    cuuuugagaaa aauacagaacaac agaguua cguaac au uuguauauauauauguuggaucu auacaaag ggauuaaacuuauu   uauuuau    auuuau   uuaua a
   gagaa                       --ag           u             g       g      c  a                       a        u              ---       -aag      ccu     u
Get sequence
Deep sequencing
244 reads, 6 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr4: 7846597-7846899 [+]
intergenic
Clustered miRNAs
< 10kb from ath-MIR863
ath-MIR5026 chr4: 7844496-7844688 [+]
ath-MIR850 chr4: 7845707-7845927 [+]
ath-MIR863 chr4: 7846597-7846899 [+]

Mature sequence ath-miR863-5p

Accession MIMAT0004309
Sequence

48 -  

uuaugucuuguugaucucaau

 - 68

Get sequence
Deep sequencing 8 reads, 3 experiments
Evidence experimental; cloned [1]

Mature sequence ath-miR863-3p

Accession MIMAT0004310
Sequence

239 -  

uugagagcaacaagacauaau

 - 259

Get sequence
Deep sequencing 208 reads, 6 experiments
Evidence experimental; cloned [1]
Validated targets

References

1
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).