Stem-loop sequence hsa-mir-675

Accession

MI0005416

Symbol

HGNC:MIR675

Description

Homo sapiens miR-675 stem-loop

Gene family

MIPF0000365; mir-675

Stem-loop

       u    u    a      cc      gacu 
cccaggg cugg gcgg gagggc  acagug    u
||||||| |||| |||| ||||||  ||||||     
ggguccc gacu cgcc cucccg  ugucgc    g
       c    -    a      ua      agug 

Deep sequencing

818 reads, 9 experiments

Genome context

• Coordinates (GRCh37.p5): chr11: 2017989-2018061 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000034770 ; H19-001; exon 1

  OTTHUMT00000142895 ; H19-002; exon 1

  OTTHUMT00000142896 ; H19-003; exon 1

  OTTHUMT00000142897 ; H19-004; exon 1

  OTTHUMT00000142898 ; H19-005; exon 1

  OTTHUMT00000142902 ; H19-009; exon 1

  OTTHUMT00000142905 ; H19-012; intron 1

  OTTHUMT00000034770 ; H19-001; exon 1

  OTTHUMT00000142895 ; H19-002; exon 1

  OTTHUMT00000142896 ; H19-003; exon 1

  OTTHUMT00000142897 ; H19-004; exon 1

  OTTHUMT00000142898 ; H19-005; exon 1

  OTTHUMT00000142902 ; H19-009; exon 1

  OTTHUMT00000142905 ; H19-012; intron 1

  OTTHUMT00000034770 ; H19-001; exon 1

  OTTHUMT00000142895 ; H19-002; exon 1

  OTTHUMT00000142896 ; H19-003; exon 1

  OTTHUMT00000142897 ; H19-004; exon 1

  OTTHUMT00000142898 ; H19-005; exon 1

  OTTHUMT00000142902 ; H19-009; exon 1

  OTTHUMT00000142905 ; H19-012; intron 1

  OTTHUMT00000142899 ; H19-006; exon 2

  OTTHUMT00000142900 ; H19-007; exon 2

  OTTHUMT00000142901 ; H19-008; exon 2

  OTTHUMT00000142899 ; H19-006; exon 2

  OTTHUMT00000142900 ; H19-007; exon 2

  OTTHUMT00000142901 ; H19-008; exon 2

  OTTHUMT00000142899 ; H19-006; exon 2

  OTTHUMT00000142900 ; H19-007; exon 2

  OTTHUMT00000142901 ; H19-008; exon 2

  ENST00000414790 ; H19-001; exon 1

  ENST00000412788 ; H19-002; exon 1

  ENST00000439725 ; H19-003; exon 1

  ENST00000411861 ; H19-004; exon 1

  ENST00000417089 ; H19-005; exon 1

  ENST00000422826 ; H19-009; exon 1

  ENST00000428066 ; H19-012; intron 1

  ENST00000414790 ; H19-001; exon 1

  ENST00000412788 ; H19-002; exon 1

  ENST00000439725 ; H19-003; exon 1

  ENST00000411861 ; H19-004; exon 1

  ENST00000417089 ; H19-005; exon 1

  ENST00000422826 ; H19-009; exon 1

  ENST00000428066 ; H19-012; intron 1

  ENST00000414790 ; H19-001; exon 1

  ENST00000412788 ; H19-002; exon 1

  ENST00000439725 ; H19-003; exon 1

  ENST00000411861 ; H19-004; exon 1

  ENST00000417089 ; H19-005; exon 1

  ENST00000422826 ; H19-009; exon 1

  ENST00000428066 ; H19-012; intron 1

  ENST00000390168 ; MIR675-201; exon 1

  ENST00000446406 ; H19-006; exon 2

  ENST00000431095 ; H19-007; exon 2

  ENST00000411754 ; H19-008; exon 2

  ENST00000535745 ; H19-201; exon 2

  ENST00000446406 ; H19-006; exon 2

  ENST00000431095 ; H19-007; exon 2

  ENST00000411754 ; H19-008; exon 2

  ENST00000535745 ; H19-201; exon 2

  ENST00000446406 ; H19-006; exon 2

  ENST00000431095 ; H19-007; exon 2

  ENST00000411754 ; H19-008; exon 2

  ENST00000535745 ; H19-201; exon 2

Database links

• ENTREZGENE: 100033819;MIR675
• HGNC: 33351;MIR675

Mature sequence hsa-miR-675-5p

• Accession: MIMAT0004284
• Previous IDs: hsa-miR-675
• Sequence: 10 - uggugcggagagggcccacagug - 32
• Deep sequencing: 792 reads, 6 experiments
• Evidence: experimental; cloned [1]
• Validated targets:
  • TARBASE:hsa-miR-675-5p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-675-5p
  • MICRORNA.ORG:hsa-miR-675-5p
  • MIRDB:hsa-miR-675-5p
  • RNA22-HSA:hsa-miR-675-5p
  • TARGETMINER:hsa-miR-675-5p
  • TARGETSCAN-VERT:hsa-miR-675

Mature sequence hsa-miR-675-3p

• Accession: MIMAT0006790
• Previous IDs: hsa-miR-675b;hsa-miR-675*
• Sequence: 45 - cuguaugcccucaccgcuca - 64
• Deep sequencing: 26 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-675-3p
  • MICRORNA.ORG:hsa-miR-675-3p
  • MIRDB:hsa-miR-675-3p
  • RNA22-HSA:hsa-miR-675-3p
  • TARGETMINER:hsa-miR-675-3p

References

1. PMID:17237358 "The imprinted H19 noncoding RNA is a primary microRNA precursor" Cai X, Cullen BR RNA. 13:313-316(2007).
2. PMID:18402656 "Hidden layers of human small RNAs" Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y BMC Genomics. 9:157(2008).