Stem-loop sequence ath-MIR824

Accession MI0005409
Description Arabidopsis thaliana miR824 stem-loop
Gene family MIPF0000442; MIR824
Stem-loop 
u         u  a   -----------    ug    u               u             uuuuguuuac     -  c -     g       a    uaaga      --au   - ---a       aacauagcuaguucgacauaccauacuacccuuuuuaaaacuauccuauauguuugaugcuagcauagcguaauuuuguguucucauggugcagcaggguuaguuuauuguguaccucuagauauauauucucuugcugcguaggguucccaagcugccaaaaacuuuuaaaaauuagugaucuguuccccaaacccccauucaauaagaaaggucuac 
 aucaccauu gu cuu           gagu  ucuc caugucuagaccauu gugagaagggagu          accaa ua c cccca ucucuaa uuug     aguauu    gcu c    auuaagg                                                                                                                                                                                                                           c
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 uagugguaa ca gaa           cuca  ggag guguagaucugguag uacucuucccuua          ugguu gu g ggggu agggguu aaau     uuauaa    cga g    ugguucc                                                                                                                                                                                                                           g
-         -  a   auggagguacu    gu    c               c             -------uau     u  a a     g       a    cuaug      gaau   u guac       acauuuacuaaaauauacuaaaacucuuagccgaaccugaucaagcuuauguuuauuuuuuucaauacauacguuguagaccuuuucaguacuuacuugaauuagcugaaugaagauauggauugaagacuuccuagucugaaaguaucccauugauuaauugauuuugucauuuggguuucuucguuccugucgagauuaucgacacugacacucgau
Get sequence
Deep sequencing
4956 reads, 7 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr4: 12625094-12625782 [+]
intergenic

Mature sequence ath-miR824

Accession MIMAT0004277
Sequence

35 -  

uagaccauuugugagaaggga

 - 55

Get sequence
Deep sequencing 4559 reads, 7 experiments
Evidence experimental; 454 [1-2], Northern [1,3], cloned [2], Solexa [4]
Validated targets

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3
PMID:17704216 "MicroRNA-mediated regulation of stomatal development in Arabidopsis" Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A Plant Cell. 19:2417-2429(2007).
4
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).