Stem-loop sequence ath-MIR853

Accession MI0005408
Description Arabidopsis thaliana miR853 stem-loop
Gene family MIPF0001182; MIR853
Stem-loop 
gagaggaacaauuaggguuguuucaa         ----------   g   c            c  ua c   g   a    -            cucuucaaggaacuugugggccucaagaaaaccugcuauaauucuaguuuuucaacau 
                          acaggguaa          agu uuc ugcugcuccccu uu  g uug aga gcca guaaauaucuuu                                                          u
                          |||||||||          ||| ||| |||||||||||| ||  | ||| ||| |||| ||||||||||||                                                           
                          ugucccauu          uca aag acgacgagggga ag  c aac ucu cggu cauuuauagaaa                                                          c
---------uagacaaaaacuguuua         cccaauuuuc   -   u            a  gc -   g   c    u            cuccuucaagguaagagguaagaauucccauuccucaacaacgacuauagucuuccuc
Get sequence
Deep sequencing
29 reads, 7 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr3: 8346367-8346656 [+]
intergenic

Mature sequence ath-miR853

Accession MIMAT0004276
Sequence

50 -  

uccccucuuuagcuuggagaag

 - 71

Get sequence
Deep sequencing 27 reads, 5 experiments
Evidence experimental; 454 [1], cloned [2]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).