Stem-loop sequence ath-MIR850

Accession MI0005405
Description Arabidopsis thaliana miR850 stem-loop
Stem-loop 
u    g     g        uua     ---ua  -ua       c g     u     c  g  u     a   cac  c      acuaua            aaucaa    u 
 uuua auagu uuauguau   uuucu     cc   uagaaac u ucagc aagau cg ac acaac aag   gu uacucu      uucuuuugcgau      uaga u
 |||| ||||| ||||||||   |||||     ||   ||||||| | ||||| ||||| || || ||||| |||   || ||||||      ||||||||||||      ||||  
 aagu uauca aauacaug   aaaga     gg   aucuuug a aguug uucua gc ug uguug uuc   ca augaga      aaggaaaugcua      aucu c
-    a     a        ---     uacac  uaa       a g     u     u  -  c     a   aua  u      aaacag            ----ca    u
Get sequence
Deep sequencing
63 reads, 6 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr4: 7845707-7845927 [+]
intergenic
Clustered miRNAs
< 10kb from ath-MIR850
ath-MIR5026 chr4: 7844496-7844688 [+]
ath-MIR850 chr4: 7845707-7845927 [+]
ath-MIR863 chr4: 7846597-7846899 [+]

Mature sequence ath-miR850

Accession MIMAT0004272
Sequence

50 -  

uaagauccggacuacaacaaag

 - 71

Get sequence
Deep sequencing 56 reads, 6 experiments
Evidence experimental; 454 [1]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).