Stem-loop sequence ath-MIR844

Accession MI0005400
Description Arabidopsis thaliana miR844 stem-loop
Gene family MIPF0001197; MIR844
Stem-loop 
-------ggaagga    uuu     ug    aau  aucuuuu                a         u           g   cuug    u   u 
              gaug   gcagu  guuu   ga       acauugaagagaagga ugguaagau gcuuauaagcu gau    aggg gag g
              ||||   |||||  ||||   ||       |||||||||||||||| ||||||||| ||||||||||| |||    |||| |||  
              cuau   cgucg  cagg   cu       uguaacuuuucuucuu aucauucua cgaauauucgg uua    ucuu cuc g
uguuuacuagugga    uuu     --    aau  -----gu                g         c           g   cgca    -   u
Get sequence
Deep sequencing
145 reads, 7 experiments
Comments

MIR844 was first identified by Rajapopalan et al [1], with two mature products names miR844-5p and miR844-3p. Fahlgren et al identify a cleavage product for the 5' mature sequence, which is therefore assumed to be the dominant mature miRNA [2].

Genome context
Coordinates (TAIR10) Overlapping transcripts
chr2: 9942151-9942335 [-]
intergenic

Mature sequence ath-miR844-5p

Accession MIMAT0004266
Previous IDs ath-miR844
Sequence

55 -  

ugguaagauugcuuauaagcu

 - 75

Get sequence
Deep sequencing 123 reads, 6 experiments
Evidence experimental; 454 [1-2], cloned [2]
Validated targets

Mature sequence ath-miR844-3p

Accession MIMAT0004267
Previous IDs ath-miR844*
Sequence

114 -  

uuauaagccaucuuacuaguu

 - 134

Get sequence
Deep sequencing 21 reads, 4 experiments
Evidence experimental; 454 [1]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).