Stem-loop sequence ath-MIR838

Accession MI0005394
Description Arabidopsis thaliana miR838 stem-loop
Gene family MIPF0001184; MIR838
Stem-loop 
---uacuuuucuaauaucac        ac          guc    g   u             g     c      u    a     ----    aga      cu 
                    gaggacuu  auggccucaa   accu ugg guugugcaagaag agaag aaaguc gucu uguau    uaug   uagcua  u
                    ||||||||  ||||||||||   |||| ||| ||||||||||||| ||||| |||||| |||| |||||    ||||   ||||||   
                    cuucugaa  uaucggaguu   ugga guc caacacguucuuc ucuuc uuucgg caga acaug    auau   aucggu  c
auuauuuauuguaauaucuu        ca          -au    -   -             a     u      c    -     uugu    agg      au
Get sequence
Deep sequencing
8 reads, 5 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr1: 28500-28706 [+]
intergenic

Mature sequence ath-miR838

Accession MIMAT0004260
Sequence

136 -  

uuuucuucuacuucuugcaca

 - 156

Get sequence
Deep sequencing 4 reads, 3 experiments
Evidence experimental; 454 [1], Solexa [2]
Validated targets

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).