Stem-loop sequence ath-MIR830

Accession MI0005386
Description Arabidopsis thaliana miR830 stem-loop
Stem-loop 
cagagucucgcuagugucuuuacuaaacacaa  uc     a   -  -  a  u c       c        u      g   acauauaauaau  a 
                                aa  uguaa cgc cu cg uc c ucuucuc aaauaguu agguua cug            uc a
                                ||  ||||| ||| || || || | ||||||| |||||||| |||||| |||            ||  
                                uu  acauu gcg ga gc ag g agaagag uuuaucaa uccaau gac            ag u
--gcuacaagaaguuuuaaguucgugagagga  ga     a   a  a  a  u a       u        -      a   cucuuugacccc  a
Get sequence
Deep sequencing
79 reads, 6 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr1: 4820355-4820549 [-]
intergenic

Mature sequence ath-miR830-5p

Accession MIMAT0004247
Previous IDs ath-miR830*
Sequence

56 -  

ucuucuccaaauaguuuagguu

 - 77

Get sequence
Deep sequencing 14 reads, 3 experiments
Evidence experimental; cloned [2]

Mature sequence ath-miR830-3p

Accession MIMAT0004248
Previous IDs ath-miR830
Sequence

124 -  

uaacuauuuugagaagaagug

 - 144

Get sequence
Deep sequencing 65 reads, 6 experiments
Evidence experimental; 454 [1-2], cloned [2], Solexa [3]

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).
3
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).